BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018F01SP1|AL427343
(669 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig966 923 0.0
>3x_Contig966
Length = 4228
Score = 923 bits (460), Expect = 0.0
Identities = 609/669 (91%)
Strand = Plus / Minus
Query: 1 gtgcttccaaaggactggaaacgttatcaccagatgggaacycaaccttggaaacaaagt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3669 gtgcttccaaaggactggaaacgttatcaccagatgggaactcaaccttggaaacaaagt 3610
Query: 61 ccgctgctagttcaatttcacctaaycycaaatactgtctcaagatactagttattaaag 120
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 3609 ccgctgctagttcaatttcacctaatctcaaatactgtctcaagatactagttattaaag 3550
Query: 121 tagccttagtttcattatcgtgctttaaggttgctgactttaagtattgcatcatttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3549 tagccttagtttcattatcgtgctttaaggttgctgactttaagtattgcatcatttctg 3490
Query: 181 ccaataatgacgagtcgtttggagtagacgttagtccgttagccctgttgatgtagaacc 240
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 3489 ccaataatgacgagtcgtttggagtagacgttagttcgttagctctgttgatgtagaacc 3430
Query: 241 atatcttggcatttatcaaayccaagtttctgtyatyatatygcyttaacacttgaggaa 300
|||||||||||||||||||| |||||||||||| || |||| || |||||||||||||||
Sbjct: 3429 atatcttggcatttatcaaatccaagtttctgttattatattgctttaacacttgaggaa 3370
Query: 301 tcacatgtgtcttgttgaactgttgcmattcatcaatcccatttgagtccaataagagcg 360
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 3369 tcacatgtgtcttgttgaactgttgcaattcatcaatcctatttgagtccaataagagcg 3310
Query: 361 attggacaatgtaatggacaaacgaattcaccycagacgacacacccaaacccgcaccac 420
|||||||||||||||||||||| |||||||| |||| || ||| |||||| || ||||
Sbjct: 3309 attggacaatgtaatggacaaatgaattcacttcagatgatacatccaaactcgtaccat 3250
Query: 421 cctgccgcaattgacacaaaccagccggatacccccccccaaaccttacagcanntccca 480
| ||| |||||||| |||||| ||| |||||| | | | |||| |||||||| | | |
Sbjct: 3249 cttgctgcaattgatacaaactagctggatactcttctctaaactttacagcattttcta 3190
Query: 481 cctnaggnccagaagnaggggggatagttttcaacagacaccccccacaagamgaatcgc 540
| | ||| | ||||| |||| |||||||||| || ||| || | | |||| ||||||
Sbjct: 3189 ctttaggtctagaagtagggtggatagtttttaatagatacttcttataagaagaatcgt 3130
Query: 541 ccggatacaccaagtccaccaagantgaagtatttcccacggtaacgncatgtctcaatg 600
||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||| ||||
Sbjct: 3129 ccggatacaccaagttcaccaagattgaagtattttccacggtaacgtcatgtcttaatg 3070
Query: 601 ccgcmaaacctctcaatgatttccatacgtaacgtgaatccattgataatgtactcttag 660
| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3069 ctgcaaaatctctcaatgatttccatacgtaacgtgaatccattgataatgtactcttag 3010
Query: 661 aaacctgct 669
|||||||||
Sbjct: 3009 aaacctgct 3001
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3109
Number of Sequences: 1807
Number of extensions: 3109
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 669
length of database: 10,358,551
effective HSP length: 16
effective length of query: 653
effective length of database: 10,329,639
effective search space: 6745254267
effective search space used: 6745254267
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.8 bits)